Online Analysis Tools - Motifs
WEBAfter you have discovered similar sequences but the motif searching tools have failed to recognize your group of proteins you can use the following tools to create a list of potential motifs. The MEME Suite-Motif-based sequence analysis tools (National Biomedical Computation Resource, U.S.A.). N.B.
Introduction - MEME Suite
WEBAug 29, 2024 — AME (Analysis of Motif Enrichment) scores a set of sequences with a motif, treating each subsequence (and its reverse complement for complementable alphabets) in the sequence as a possible match to the motif.
Homer Software and Data Download
WEBHOMER Motif Discovery and Analysis. HOMER contains a novel motif discovery algorithm that was designed for regulatory element analysis in genomics applications (DNA only, no protein).
大碗带你学习ChIP-seq下游分析之motif 分析！ - 知乎专栏
WEBDec 2, 2023 — Motif分析的软件有很多种，较为常见的MEME和Homer两种。本次主要为大家介绍Homer进行motif分析的主要步骤及原理。 Motif分析输入的数据一般是ChIP-seq流程过程中MACS2 进行callpeak之后的bed（narrawPeak或broadPeak）文件，也可以是自己人为整理的感兴趣区域bed文件。
MOTIF: Searching Protein Sequence Motifs - GenomeNet
WEBGenerate Profile. KEGG2. Help. Enter query sequence: (in one of the three forms) Sequence ID. (Example) mja:MJ_1041. Local file name. Sequence data. Select motif libraries : ( Help )
Motif Analytics
WEBA paradigm-shifting toolkit for sequence analytics: rich flow visualizations, purpose-built sequence operations, real-time queries.
MoMo - MEME Suite
WEBMoMo discovers sequence motifs associated with different types of protein post-translational modifications (PTMs) (sample output). The program takes as input a collection of PTMs identified using protein mass spectrometry.
Motif analysis with Signac • Signac - Stuart Lab
WEBAug 20, 2024 — In this tutorial, we will perform DNA sequence motif analysis in Signac. We will explore two complementary options for performing motif analysis: one by finding overrepresented motifs in a set of differentially accessible peaks, one method performing differential motif activity analysis between groups of cells.
Motif Enrichment Analysis: a unified framework and an ... - PubMed
WEBApr 1, 2010 — Motif Enrichment Analysis (MEA) seeks to determine which DNA-binding transcription factors control the transcription of a set of genes by detecting enrichment of known binding motifs in the genes' regulatory regions.
How to Do Thematic Analysis | Step-by-Step Guide & Examples
WEBSep 6, 2019 — Thematic analysis is a good approach to research where you’re trying to find out something about people’s views, opinions, knowledge, experiences or values from a set of qualitative data – for example, interview transcripts, social media profiles, or …