RNA-seq and ChIP-seq as Complementary Approaches for Comprehension of ...
WEBDec 25, 2019 — In this paper, we discuss the integration of transcriptional factor studies through RNA sequencing (RNA-seq) and Chromatin Immunoprecipitation sequencing (ChIP-seq). We show how the data from ChIP-seq can strengthen information generated from RNA-seq in elucidating gene regulatory mechanisms.
Understanding the Difference Between RNA, ATAC, and ChIP-sequencing
WEBNov 29, 2019 — Between ChIP, ATAC, and RNA-seq, the latter is the most frequently used NGS technique, where the total RNA complement from a given sample is obtained and sequenced using a next generation ...
intePareto: an R package for integrative analyses of RNA-Seq and ChIP ...
WEBDec 29, 2020 — With intePareto we match RNA-Seq and ChIP-Seq data at the level of genes, perform differential expression analysis between biological conditions, and prioritize genes with consistent changes in RNA-Seq and ChIP-Seq data using Pareto optimization.
RNA-seq and ChIP-seq as Complementary Approaches for ... - PubMed
WEBDec 25, 2019 — In this paper, we discuss the integration of transcriptional factor studies through RNA sequencing (RNA-seq) and Chromatin Immunoprecipitation sequencing (ChIP-seq). We show how the data from ChIP-seq can strengthen information generated from RNA-seq in elucidating gene regulatory mechanisms.
SeqAcademy: an educational pipeline for RNA-Seq and ChIP-Seq …
WEBSep 22, 2020 — This user-friendly pipeline, fully written in markdown language, emphasizes the use of publicly available RNA-Seq and ChIP-Seq data and strings together popular tools that bridge that gap between raw sequencing reads and biological insight.
How to Integrate ChIP-Seq and RNA-Seq Data - Partek Inc
WEBJan 23, 2019 — To illustrate how easy it is to analyze and integrate multi-omics data in Partek Flow, I took a quick look at some data from a recently published study. In the study, the authors used ChIP-Seq and RNA-Seq data to characterize TGF-β signaling through the SMAD2/3 transcription factors.
Methods for ChIP-seq analysis: A practical workflow and …
WEBMar 1, 2021 — Chromatin immunoprecipitation followed by sequencing (ChIP-seq) analysis is a key technology in epigenomic research. This method uses an antibody for a specific DNA-binding protein or a histone modification to identify enriched loci within a …
Seq-ing answers: Current data integration approaches to uncover ...
WEBJan 1, 2020 — Specifically, we show how ChIP-seq and RNA-seq data can be used to identify the target genes of a TF as well as coregulators for transcription, and we review methods that leverage chromatin assays to predict gene expression.
Computation for ChIP-seq and RNA-seq studies - PubMed
WEBGenome-wide measurements of protein-DNA interactions and transcriptomes are increasingly done by deep DNA sequencing methods (ChIP-seq and RNA-seq). The power and richness of these counting-based measurements comes at the cost of routinely handling tens to hundreds of millions of reads.
ChIP–seq: advantages and challenges of a maturing technology
WEBSep 8, 2009 — Key Points. Chromatin immunoprecipitation followed by sequencing (ChIP–seq) can be used to map DNA-binding proteins and histone modifications in a genome-wide manner at base-pair...
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